Species: Hemerocallis citrina
Accession Number
SRR11610941- SRR11610943
Sample
Sample Location: in the Hemerocallis Germplasm Resource Nursery located on the campus of Shanxi Agricultural University (Taigu, Shanxi Province, China)
Sample Part: the fresh roots, flower buds, leaves
Sequencing
Sequencing platform: Illumina Hiseq 2500
Sequencing data: 56,000,000 clean reads
Assembly and Annotation
Assembly software: Trinity
Assembly result: 6,390,477 contigs, 164,723 transcripts, with mean length of 838.72 bp, N50 of 1,467 bp. 92,107 unigenes, with mean length of 575.16 bp, N50 of 908 bp.
Annotation Method: KOG, GO, KEGG, COG, NR
Data Url
Reference
Li Sen,Ji Fangfang,Hou Feifan,Cui Huliang,Shi Qingqing,Xing Guoming,Weng Yiqun,Kang Xiuping. Characterization of Hemerocallis citrina Transcriptome and Development of EST-SSR Markers for Evaluation of Genetic Diversity and Population Structure of Hemerocallis Collection.[J]. Frontiers in plant science,2020,11.
