Species: Vinca minor
Accession Number
SRR5581424- SRR5581425
Sample
Sample Location: vitro established plants
Sample Part: roots
Sequencing
Sequencing platform: Illumina NextSeq 500
Sequencing data: glass house shifted plant: 67,733,538 raw reads, 53,220,084 clean reads. transformed roots: 83,740,316 raw reads, 64,979,786 clean reads.
Assembly and Annotation
Assembly software: Trinity
Assembly result: Glasshouse shifted Plant: 83,286 transcripts, with average Length of 1,060 bp, N50 value of 1,457 bp. Transformed roots: 89620 transcripts, with average Length of 1,038.9 bp, N50 value of 1,430 bp.
Annotation Method: uniprot
Data Url
Reference
Verma P , Singh N , Khan S A , et al. TIAs pathway genes and associated miRNA identification in Vinca minor: supporting aspidosperma and eburnamine alkaloids linkage via transcriptomic analysis[J]. Physiology and Molecular Biology of Plants, 2020.
