Species: Nardostachys jatamansi
Accession Number
PRJNA608834
Sample
Sample Location: Tandi, Lahaul & Spiti, Himachal Pradesh, India (latitude 32° 33′ 53″ N; longitude 76° 58′ 05″ E and altitude 3040 m amsl)
Sample Part: leaf, rhizome
Sequencing
Sequencing platform: Illumina Genome Analyzer Iix
Sequencing data: Leaves: 13,927,919 raw reads, 13,873,085 clean reads. Rhizomes: 9,531,398 raw reads, 9,277,690 clean reads.
Assembly and Annotation
Assembly software: Trinity
Assembly result: Leaves: 32,491 transcripts, N50 value of 1,110 bp. Rhizomes: 35,777 transcripts, N50 value of 1,101 bp.
Annotation Method: GO, KEGG
Data Url
Reference
Dhiman N, Kumar A, Kumar D, et al. De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites[J]. Scientific reports, 2020, 10(1): 1-13.
