Species: Gnetum luofuense

Accession Number

PRJNA622631

Sample

Sample Location: collected at immature (IS) and mature (MS) developmental stages from a female individual (voucher number “CH003”, SYS) cultivated in the Bamboo Garden at Sun Yat-sen University on September 2nd and 28th 2018.

Sample Part: seeds

Sequencing

Sequencing platform: PacBio SMRT, Illumina HiSeq 4000

Sequencing data: PacBio: 12,869,707 subreads (19.81 Gb) with an average length of 1,540 bp.

Assembly and Annotation

Assembly software: PacBio SMRTlink v. 5.1 software, ICE, Quiver, LoRDEC, GMAP

Assembly result: 165,883 polished consensus reads, with mean length of 1,854 bp, an N50 of 2,254 bp. 162,887 (98.19%) reads were mapped to the reference genome, of these, 63,049 uniquely mapped reads (38.01% of total mapped reads).

Annotation Method: GO, KEGG, Pfam, KOG/COG, NR, Swiss-Prot

Reference

Deng, N., Hou, C., He, B. et al. A full-length transcriptome and gene expression analysis reveal genes and molecular elements expressed during seed development in Gnetum luofuense. BMC Plant Biol 20, 531 (2020).

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