Species: Tetrastigma hemsleyanum
Accession Number
PRJNA398985
Sample
Sample Location: leaf materials of the CSE lineage were obtained in July 2014 from one individual in South/East sublineages (Ningbo, Zhejiang Province;30.35°N, 122.32°E, alt. 162 m) and one individual in Central sublineages (Malipo, Yunnan Province; 23.12°N, 104.84°E, alt. 1700 m), while those of the SW lineage were collected in April 2015 from one individual in Guilin Botanical Garden, Guangxi Province (transplanted from Quanzhou, Guangxi Province;25.08°N, 110.30°E, alt. 170 m).
Sample Part: leaves
Sequencing
Sequencing platform: Illumina HiSeq 3000
Sequencing data: 47,880,882 and 122,587,340 clean reads of the CSE and SW
Assembly and Annotation
Assembly software: Trinity
Assembly result: CSE lineage: 101,421 contigs with a mean length of 413 bp and an N50 value of 1,001 bp, 52,838 unigenes with an average length of 1,034 bp and an N50 value of 1,667 bp. SW lineage: 138,294 contigs with a mean length of 377 bp and an N50 value of 926 bp, 65,197 unigenes were obtained with a mean length of 1,095 bp and an N50 value of 1,841 bp.
Annotation Method: Nr, Nt, Swiss-Prot, KEGG, COG
Data Url
Reference
Wang Y , Jiang W , Ye W , et al. Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum[J]. Bmc Plant Biology, 2018, 18(1):208.
