Species,"Taxus yunnanensis" "Sample Location","cultivar Zd2 (established by vegetative propagation) were grown in the fields of Songkou town Meizhou, Guangdong China (40° 01 N’ 116° 16’ E) " "Sample Part","needle, branch and root" "Sequencing platform","Illumina HiSeq 2000" "Sequencing data","30,048,566, 31,282,310 and 31,513,946 raw reads" "Assembly software",Trinity "Assembly result","a total of 24,229,442, 23,662,085 and 23,369,760 reads were mapped in the root, branch, and needle respectively. Among the mapped reads, 17,925,541, 16,998,853 and 17,028,029 could be uniquely mapped to the assembled transcriptome while 6,303,899, 6,663,232 and 6,341,731 were mapped to multiple positions on reference transcriptome in the root, branch, and needle respectively." "Annotation Method","NR, KEGG, Swiss-Prot, GO, COG"