Chinese Herbal Plant Genome Database

Transcriptomes

Species	Family	Genus	Sequencing platform
Coptis deltoidea	Ranunculaceae	Coptis	PacBio RS II, Illumina HiSeq 2500
Poria cocos	Polyporaceae	Poria	Illumina HiSeq 2500
Drynaria roosii	Polypodiaceae	Drynaria	PacBio RS II, Illumina HiSeq 4000
Coix lacryma-jobi	Poaceae	Coix	PacBio RS II, HiSeq 2500
Plumbago zeylanica	Plumbaginaceae	Plumbago	Illumina NextSeq 500
Plumbago zeylanica	Plumbaginaceae	Plumbago	Illumina HiSeq2000
Digitalis ferruginea subsp. schischkinii	Plantaginaceae	Digitalis	Illumina HiSeq 4000
Dactylicapnos scandens	Papaveraceae	Dactylicapnos	Illumina HiSeq 2000
Papaver nudicaule	Papaveraceae	Papaver	PacBio RS, Illumina HiSeq 4000
Papaver rhoeas	Papaveraceae	Papaver	PacBio RS, Illumina HiSeq 4000
Paeonia lactiflora	Paeoniaceae	Paeonia	Illumina HiSeq 2000
Paeonia ostii	Paeoniaceae	Paeonia	Illumina HiSeq 4000
Paeonia ostii var. lishizhenii	Paeoniaceae	Paeonia	Illumina HiSeq 2000
Paeonia suffruticosa cv.	Paeoniaceae	Paeonia	Illumina HiSeq 4000
Paeonia suffruticosa	Paeoniaceae	Paeonia	BGISEQ -500

Download

Ardisia crenata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/26_Ardisia_crenata/Unigene.blast.protein.fa

Ardisia japonica

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/27_Ardisia_japonica/Unigene.blast.protein.fa

Ardisia pusilla

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/24_Ardisia_pusilla/Unigene.blast.protein.fa

Ardisia quinquegona

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/25_Ardisia_quinquegona/Unigene.blast.protein.fa

Balanophora involucrata

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/22_Balanophora_involucrata/Balanophora_involucrata-Unigene.blast.protein.fa

Bergenia purpurascens

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Centranthera grandiflora

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/18_Bergenia_purpurascens/Bergenia_purpurascens-Unigene.blast.protein.fa

Coptis teeta

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/7_Coptis_teeta/Coptis_teeta_Wall-Unigene.blast.protein.fa

Curculigo orchioides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/13_Hemsleya_chinensis/Hemsleya_chinensis-Unigene.blast.protein.fa

Cyclocarya paliurus

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/20_Cyclocarya_paliurus/Trinity.RapClust.pep.fas

Desmodium concinnum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/17_Centranthera_grandiflora/Unigene.protein.fa

Dipsacus asperoides

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/19_Dipsacus_asperoides/Unigene.protein.fa

Erigeron breviscapus

hormone:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLength.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/1_Erigeron_breviscapus/FullLengthgene.blast.pep.fasta

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/2_Erigeron_breviscapus/Erigeron_breviscapus-Unigene.blast.protein.fa

Fibraurea recisa

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/23_Fibraurea_recisa/Fibraurea_recisa-Unigene.blast.protein.fa

Gelsemium elegans

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/28_Gelsemium_elegans/Gelsemium_elegans-Unigene.blast.protein.fa

Gentiana rigescens

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/15_Gentiana_rigescens/Unigene.blast.protein.fa

Flower:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/16_Desmodium_concinnum/Unigene.protein.fa

Gynostemma longipes

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/21_Gynostemma_longipes/GlUnigene.blast.protein.fa

Gynostemma pentaphyllum

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene-JDA.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/4_Gynostemma_pentaphyllum/Gynostemma_pentaphyllum-Unigene.blast.protein.fa

Hemsleya chinensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/14_Gentiana_rigescens/Unigene.blast.protein.fa

Marsdenia tenacissima

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/3_Marsdenia_tenacissima/Marsdenia_tenacissima-Unigene.blast.protein.fa

Neoalsomitra integrifoliola

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/10_Neoalsomitra_integrifoliola/Trinity.RapClust.pep.fas

Panax notoginseng

L:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/5-Panax_notoginseng/Panax_notoginseng-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/6_Panax_notoginseng/Unigene.blast.protein.fa

Panax vietnamensis

Root:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.fa

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.cds.fa

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/8_Panax_vietnamensis/Panax_vietnamensis-Unigene.blast.protein.fa

RSL:

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.fas

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.cds.fas

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/9_Panax_vietnamensis/Trinity.RapClust.pep.fas

Paris polyphylla var. yunnanensis

Unigene: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/mRNA.fasta

Cds: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.cds.fasta

Protein: http://medicialplants.ynau.edu.cn/unpublished_data/Transcriptome/11_Paris_polyphylla_var.yunnanensis/predict.pep.fasta